Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs374462379 chr19:37906616 CAA/C 2.28E-13 132 45.47 37.53 17.1 KM Plot
TGCT rs374835024 chr12:107103426 TAGAG/T 1.19E-12 132 42.03 49.93 27.93 KM Plot
TGCT rs3752844 chr5:1814369 C/T 8.63E-6 134 42.27 41.97 24.73 KM Plot
TGCT rs3756344 chr5:1809542 G/A 5.72E-6 133 42.27 43.9 24.73 KM Plot
TGCT rs3757757 chr7:127695857 G/A 5.66E-5 134 46.07 37.53 9.77 KM Plot
TGCT rs3763234 chr6:42617961 T/G 2.46E-8 134 37.62 51.67 20.6 KM Plot
TGCT rs3765107 chr12:129278310 A/G 1.39E-5 134 41.33 44.28 29.53 KM Plot
TGCT rs376909056 chr17:39372416 TAC/T 7.11E-7 133 13.17 46.03 42.27 KM Plot
TGCT rs377307583 chr7:158585051 CA/CAA 0 133 42.27 28.87 0.57 KM Plot
TGCT rs3776152 chr5:1803164 C/G 6.08E-6 132 42.27 45.83 24.73 KM Plot
TGCT rs3776154 chr5:1800127 T/G 1.89E-5 132 42.27 43.9 20.6 KM Plot
TGCT rs3779327 chr7:77679327 C/G 8.52E-9 134 20.6 51.32 40.57 KM Plot
TGCT rs3782709 chr12:107205753 A/G 0.000124 132 42.03 49.93 28.8 KM Plot
TGCT rs3808053 chr7:127717435 T/G 1.42E-13 133 43.68 37.32 17.1 KM Plot
TGCT rs3808058 chr7:127668071 C/T 5.66E-5 134 46.07 37.53 9.77 KM Plot